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<h1 class="epydoc">Class TargetPosition</h1><p class="nomargin-top"></p>
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<pre class="literalblock">

TargetPosition is an alignment column specialized to efficiently compute
 an alignment score with a QueryPosition.

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      clone( (TargetPosition)arg1) -&gt; TargetPosition :</td>
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          <td><span class="summary-sig"><a href="moltk.Aligner.TargetPosition-class.html#get_gap_extension_penalty" class="summary-sig-name">get_gap_extension_penalty</a>(<span class="summary-sig-arg">...</span>)</span><br />
      get_gap_extension_penalty( (TargetPosition)arg1) -&gt; Information :</td>
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      get_gap_open_penalty( (TargetPosition)arg1) -&gt; Information :</td>
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      score( (TargetPosition)arg1, (QueryPosition)rhs) -&gt; Information :</td>
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<a name="__init__"></a>
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__init__( (object)arg1) -&gt; None :

    C++ signature :
        void __init__(struct _object *)

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        object.__init__
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  <p>helper for pickle</p>
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  <pre class="literalblock">

clone( (TargetPosition)arg1) -&gt; TargetPosition :
    
     TargetPosition is an alignment column specialized to efficiently compute
      an alignment score with a QueryPosition.
    

    C++ signature :
        class moltk::Aligner::TargetPosition * clone(class moltk::Aligner::TargetPosition {lvalue})

clone( (TargetPosition)arg1) -&gt; None :

    C++ signature :
        void clone(struct Aligner_wrapper::TargetPosition_wrapper {lvalue})

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  <pre class="literalblock">

get_gap_extension_penalty( (TargetPosition)arg1) -&gt; Information :

    C++ signature :
        struct moltk::units::Quantity&lt;struct moltk::units::Unit&lt;struct moltk::units::Dimension&lt;0,0,0,0,0,0,1&gt; &gt;,double&gt; get_gap_extension_penalty(class moltk::Aligner::TargetPosition {lvalue})

get_gap_extension_penalty( (TargetPosition)arg1) -&gt; None :

    C++ signature :
        void get_gap_extension_penalty(struct Aligner_wrapper::TargetPosition_wrapper {lvalue})

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    >&nbsp;
    </td>
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  <pre class="literalblock">

get_gap_open_penalty( (TargetPosition)arg1) -&gt; Information :

    C++ signature :
        struct moltk::units::Quantity&lt;struct moltk::units::Unit&lt;struct moltk::units::Dimension&lt;0,0,0,0,0,0,1&gt; &gt;,double&gt; get_gap_open_penalty(class moltk::Aligner::TargetPosition {lvalue})

get_gap_open_penalty( (TargetPosition)arg1) -&gt; None :

    C++ signature :
        void get_gap_open_penalty(struct Aligner_wrapper::TargetPosition_wrapper {lvalue})

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  </h3>
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    >&nbsp;
    </td>
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  <pre class="literalblock">

score( (TargetPosition)arg1, (QueryPosition)rhs) -&gt; Information :

    C++ signature :
        struct moltk::units::Quantity&lt;struct moltk::units::Unit&lt;struct moltk::units::Dimension&lt;0,0,0,0,0,0,1&gt; &gt;,double&gt; score(class moltk::Aligner::TargetPosition {lvalue},class moltk::Aligner::QueryPosition)

score( (TargetPosition)arg1, (QueryPosition)arg2) -&gt; None :

    C++ signature :
        void score(struct Aligner_wrapper::TargetPosition_wrapper {lvalue},class moltk::Aligner::QueryPosition)

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